Links
Google Scholar | PubMed | ResearchGate
2019
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation
F. Li, N. Upadhyaya, J. Sperschneider, O. Matny, H. Nguyen-Phuc, R. Mago, C. Raley, M. Miller, K. Silverstein, E. Henningsen, CD Hirsch, B. Visser, Z. Pretorius, B. Steffenson, B. Schwessinger, P. Dodds, M. Figueroa
2019 | bioRxiv
Highly genotype- and tissue-specific single-parent expression drives dynamic gene expression complementation in maize hybrids
Z. Li, P. Zhou, R. Della Coletta, T. Zhang, A. Brohammer, B. Vaillancourt, A. Lipzen, C. Daum, K. Berry, N. de Leon, CD Hirsch, CR Buell, S. Kaeppler, N. Springer, CN Hirsch
2019 | bioRxiv
Dynamic patterns of transcript abundance of transposable element families in maize
S. Anderson, M. Stitzer, P. Zhou, J. Ross-Ibarra, CD Hirsch, N. Springer
2019 | bioRxiv
Transposable elements contribute to dynamic genome content in maize
S. Anderson, M. Stitzer, A. Brohammer, P. Zhou, J. Noshay, CD Hirsch, J. Ross-Ibarra, CN Hirsch, N. Springer
2019 | bioRxiv
Classifying cold stress responses of inbred maize seedlings using RGB imaging
T. Enders, S. St. Dennis, J. Oakland, S. Callen, M. Gehan, N. Miller, E. Spalding, N. Springer, CD Hirsch
2019 | Plant Direct
2018
De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust
M. Miller, Y. Zhang, V. Omidvara, J. Sperschneider, B. Schwessinger, C. Raley, J. Palmer, D. Garnica, N. Upadhyayah, J. Rathjen, J. Taylor, R. Park, P. Dodds, CD Hirsch, S. Kianiana, M. Figueroa
2018 | mBio
2017
Natural variation for gene expression responses to abiotic stress in maize
A. Waters, I. Makarevitch, J. Noshay, L. Burghardt, CN Hirsch, CD Hirsch, N. Springer
2017 | The Plant Journal
Transposable element influences on gene expression in plants
CD Hirsch, N. Springer
2017 | BBA Gene Regulatory Mechanism
2016
Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptomic diversity in maize
CN Hirsch, CD Hirsch, A. Brohammer, M. Bowman, I. Soifer, O. Barad, D. Shem-Tov, K. Baruch, F. Lu, A. Hernandez, C. Fields, C. Wright, K. Koehler, N. Springer, E. Buckler, CR Buell, N. de Leon, S. Kaeppler, K. Childs, M. Mikel
2016 | The Plant Cell
A toolbox of potato genetic and genomic resources
CD Hirsch, CR Buell, CN Hirsch
2016 | American Journal of Potato Research
2015
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Q. Li, J. Gent, G. Zynda, J. Song, I. Makarevitch, CD Hirsch, CN Hirsch, RK Dawe, T. Madzima, K. McGinnis, D. Lisch, R. Schmitz, M. Vaughn, N. Springer
2015 | Proceedings of the National Academy of Sciences
Genomic limitations to RNA sequencing expression profiling
CD Hirsch, N. Springer, CN Hirsch
2015 | The Plant Journal
2014
Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes
CD Hirsch, J. Evans, CR Buell, CN Hirsch
2014 | Briefings in Functional Genomics
Spud DB: a resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding
CD Hirsch, J. Hamilton, K. Childs, J. Cepela, E. Crisovan, B. Vaillancourt, CN Hirsch, M. Habermann, B. Neal, CR Buell
2014 | The Plant Genome
2013 -
Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries
CN Hirsch, CD Hirsch, K. Felcher, J. Coombs, D. Zarka, A. Van Deynze, W. De Jong, R. Veilleux, S. Jansky, P. Bethke, D. Douches, CR Buell
2013 | Genes | Genomes | Genetics
Centromeres: sequences, structure, and biology
CD Hirsch, J. Jiang
2012 | Plant Genome Diversity Volume 1
Conservation and purifying selection of transcribed genes located in a rice centromere
C. Fan, J. Walling, J. Zhang, CD Hirsch, J. Jiang, R. Wing
2011 | The Plant Cell
Organization and evolution of subtelomeric satellite repeats in the potato genome
G. Torres, Z. Gong, M. Iovene, CD Hirsch, CR Buell, G. Bryan, P. Novák, J. Macas, J. Jiang
2011 | Genes | Genomes | Genetics
Lineage-specific adaptive evolution of the centromeric protein CENH3 in diploid and allotetraploid Oryza species
CD Hirsch, Y. Wu, H. Yan, J. Jiang
2009 | Molecular Biology and Evolution
Structure and evolution of plant centromeres
K. Nagaki, J. Walling, CD Hirsch, J. Jiang, M. Murata
2009 | Progress in Molecular and Subcellular Biology: Centromere