Publications


Links

Google Scholar | PubMed | ResearchGate


2017

De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust

M. Miller, Y. Zhang, V. Omidvara, J. Sperschneider, B. Schwessinger, C. Raley, J. Palmer, D. Garnica, N. Upadhyayah, J. Rathjen, J. Taylor, R. Park, P. Dodds, CD Hirsch, S. Kianiana, M. Figueroa

2017 | bioRxiv

 

Transposable element influences on gene expression in plants

CD Hirsch, N. Springer

2017 | BBA Gene Regulatory Mechanism


2016

Natural variation for gene expression responses to abiotic stress in maize

A. Waters, I. Makarevitch, J. Noshay, L. Burghardt, CN Hirsch, CD Hirsch, N. Springer

2016 | The Plant Journal

 

Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptomic diversity in maize

CN Hirsch, CD Hirsch, A. Brohammer, M. Bowman, I. Soifer, O. Barad, D. Shem-Tov, K. Baruch, F. Lu, A. Hernandez, C. Fields, C. Wright, K. Koehler, N. Springer, E. Buckler, CR Buell, N. de Leon, S. Kaeppler, K. Childs, M. Mikel

2016 | The Plant Cell

 

A toolbox of potato genetic and genomic resources

CD Hirsch, CR Buell, CN Hirsch

2016 | American Journal of Potato Research


2015

RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

Q. Li, J. Gent, G. Zynda, J. Song, I. Makarevitch, CD Hirsch, CN Hirsch, RK Dawe, T. Madzima, K. McGinnis, D. Lisch, R. Schmitz, M. Vaughn, N. Springer

2015 | Proceedings of the National Academy of Sciences

 

Genomic limitations to RNA sequencing expression profiling

CD Hirsch, N. Springer, CN Hirsch

2015 | The Plant Journal


2014

Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes

CD Hirsch, J. Evans, CR Buell, CN Hirsch

2014 | Briefings in Functional Genomics

 

Spud DB: a resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding

CD Hirsch, J. Hamilton, K. Childs, J. Cepela, E. Crisovan, B. Vaillancourt, CN Hirsch, M. Habermann, B. Neal, CR Buell

2014 | The Plant Genome

 


2013 -

Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries

CN Hirsch, CD Hirsch, K. Felcher, J. Coombs, D. Zarka, A. Van Deynze, W. De Jong, R. Veilleux, S. Jansky, P. Bethke, D. Douches, CR Buell

2013 | Genes | Genomes | Genetics

 

Centromeres: sequences, structure, and biology

CD Hirsch, J. Jiang

2012 | Plant Genome Diversity Volume 1

 

Conservation and purifying selection of transcribed genes located in a rice centromere

C. Fan, J. Walling, J. Zhang, CD Hirsch, J. Jiang, R. Wing

2011 | The Plant Cell

 

Organization and evolution of subtelomeric satellite repeats in the potato genome

G. Torres, Z. Gong, M. Iovene, CD Hirsch, CR Buell, G. Bryan, P. Novák, J. Macas, J. Jiang

2011 | Genes | Genomes | Genetics

 

Lineage-specific adaptive evolution of the centromeric protein CENH3 in diploid and allotetraploid Oryza species

CD Hirsch, Y. Wu, H. Yan, J. Jiang

2009 | Molecular Biology and Evolution

 

Structure and evolution of plant centromeres

K. Nagaki, J. Walling, CD Hirsch, J. Jiang, M. Murata

2009 | Progress in Molecular and Subcellular Biology: Centromere